Diff pysam-0.21.0 with a pysam-9999
| /usr/portage/sci-biology/pysam/pysam-9999.ebuild 2023-10-09 14:52:35.024368490 +0300 | ||
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| 7 | 7 | |
| 8 | 8 |
inherit distutils-r1 |
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| 10 |
if [[ ${PV} == *9999 ]]; then
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inherit git-r3 |
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EGIT_REPO_URI="https://github.com/pysam-developers/pysam.git" |
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else |
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SRC_URI="https://github.com/pysam-developers/pysam/archive/v${PV}.tar.gz -> ${P}.gh.tar.gz"
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KEYWORDS="~amd64 ~x86" |
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fi |
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| 10 | 18 |
DESCRIPTION="Python interface for the SAM/BAM sequence alignment and mapping format" |
| 11 | 19 |
HOMEPAGE=" |
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https://github.com/pysam-developers/pysam |
| 13 | 21 |
https://pypi.org/project/pysam/" |
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SRC_URI="https://github.com/pysam-developers/pysam/archive/v${PV}.tar.gz -> ${P}.gh.tar.gz"
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| 15 | 22 | |
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LICENSE="MIT" |
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SLOT="0" |
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KEYWORDS="~amd64 ~x86" |
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RDEPEND="=sci-libs/htslib-1.17*:=" |
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RDEPEND=">=sci-libs/htslib-1.17" |
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DEPEND="${RDEPEND}
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dev-python/cython[${PYTHON_USEDEP}]
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dev-python/setuptools[${PYTHON_USEDEP}]"
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| 24 | 30 |
BDEPEND=" |
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test? ( |
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=sci-biology/bcftools-1.17* |
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=sci-biology/samtools-1.17* |
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>=sci-biology/bcftools-1.17 |
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>=sci-biology/samtools-1.17 |
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)" |
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distutils_enable_tests pytest |
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DISTUTILS_IN_SOURCE_BUILD=1 |
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PATCHES=( |
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# backport |
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# https://github.com/pysam-developers/pysam/commit/17bb13dcfdb56ac238458dcef23fe01893a892e9 |
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"${FILESDIR}"/${P}-cython-3.patch
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) |
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EPYTEST_DESELECT=( |
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# only work with bundled htslib |
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'tests/tabix_test.py::TestRemoteFileHTTP' |