abyss

Description:Assembly By Short Sequences - a de novo, parallel, paired-end sequence assembler
License: abyss
Homepage:http://www.bcgsc.ca/platform/bioinfo/software/abyss/
Location:Portage
Legend:
  • + - stable
  • ~ - unstable
  • M - hardmask
alpha amd64 arm hppa ia64 m68k mips ppc ppc64 s390 sh sparc x86
2.0.2-r1 - ~ - - - - - - - - - - ~

USE flags

  • misc-haskell - build abyss-samtobreak tool, pull in haskell toolchain
  • mpi - Add MPI (Message Passing Interface) layer to the apps that support it
  • openmp - Build support for the OpenMP (support parallel computing), requires >=sys-devel/gcc-4.2 built with USE="openmp"

Also available in: Atom

Thank you!